.. gromacs_ad_example:

Using Gromacs for the Alanine Dipeptide example
===============================================

This is the same as the introductory example using flexible length TPS,
except that it uses Gromacs as the MD engine instead of OpenMM.

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.. notebook:: examples/gromacs/AD_tps_1_trajectory.ipynb
   :skip_exceptions:

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.. notebook:: examples/gromacs/AD_tps_2a_run_flex.ipynb
   :skip_exceptions:

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.. notebook:: examples/gromacs/AD_tps_3a_analysis_flex.ipynb
   :skip_exceptions: