.. _topics:

User Guide Topics
=================

So far, the OPS documentation is partial, and not fully organized. However,
we've been writing up detailed descriptions on various topics as the need
arises, often based on user feedback. There are those documents. Eventually,
this will be reorganized into a structured user guide. We want our early
users to have access to as much documentation as possible, so we're
providing this here the unorganized form.

.. toctree::
   :maxdepth: 2

   absolute_beginners
   simulation_setup
   setting_up_sample_sets
   ops_output
   data_objects
   creating_collective_variables
   ensembles_apply_to_trajectories_not_frames
   common_setups
   which_network
   transitions_and_networks
   tis_analysis
   ensemble_tricks
   how_use
..   troubleshooting
..   error_messages