OpenPathSampling
Installation
Platforms
Dependencies
Testing Your Installation
OpenPathSampling Examples
Alanine Example
Langevin Example
Sliced Example
OpenPathSampling Storage
Toy Dynamics Example
PathTree Example
What’s New?
Frequently Asked Questions
Discussion Forums
Orderparameter Functions
basic orderparamters
simple orderparameters
mdtraj orderparamters
msmbuilder3 orderparameters
Volume Functions
basic volumes
set-based volume combinations
collective variable-based volumes
voronoi cell volumes
volume factory
Ensemble Functions
Volume Ensembles
Set-based Ensemble combinations
length Ensembles
ShootingPoint Functions
shootingpoint
ShootingPointSelector Functions
basic selector
special selector
PathMover Functions
Abstract class
Changing the trajectory
Changing the ensemble
Changing the replica ID
Combining movers
Pre-made combined movers
mover factory
Calculation Functions
basic calculations
special calculations
Engine Functions
engine basic
OpenMM
Storage Functions
storages
stores
OPS File Format
Overview
API Functions
OrderParameter
Dynamics Engine
Shooting
Ensemble
Volume
PathMover
Storage
Snapshot
README
Building the documentation
OpenPathSampling
Docs
»
Calculation Functions
»
openpathsampling.calculation.Calculation
View page source
openpathsampling.calculation.Calculation
¶
class
openpathsampling.calculation.
Calculation
(
storage
,
engine=None
)
¶
__init__
(
storage
,
engine=None
)
¶
Methods
__init__
(storage[, engine])
from_dict
([my_dict])
run
(nsteps)
set_replicas
(samples)
to_dict
()
Attributes
calc_name
dictable