Analysis Tools

Path histograms

PathHistogram(left_bin_edges, bin_widths[, ...])	N-dim sparse histogram for trajectories.
PathDensityHistogram(cvs, left_bin_edges, ...)	Histogram for path density plot.

Replica network analysis

ReplicaNetwork(scheme, steps[, replicas])	Analysis tool for networks of replica exchanges.
ReplicaNetworkGraph(repx_network)	Wrapper for NetworkX graph object generated by replica exchange network.

Other analysis tools

ChannelAnalysis(steps, channels[, replica])	Analyze path sampling simulation for multiple channels.
ShootingPointAnalysis(steps, states[, ...])	Container and methods for shooting point analysis.