openpathsampling.collectivevariable.InVolumeCV

class openpathsampling.collectivevariable.InVolumeCV(name, volume)

Turn a openpathsampling.volume.Volume into a collective variable

name

volume

__init__(name, volume)

Parameters

• name (string) – name of the collective variable

• volume (openpathsampling.Volume) – the Volume instance to be treated as a (storable) CV

Methods

__init__(name, volume)	param name name of the collective variable
args()	Return a list of args of the __init__ function of a class
base()	Return the most parent class actually derived from StorableObject
cache_all()	Sync this CV with attached storages
count_weaks()	Return number of objects subclassed from StorableObject still in memory
descendants()	Return a list of all subclassed objects
disable_diskcache()
enable_diskcache()
fix_name()	Set the objects name to be immutable.
from_dict(dct)	Reconstruct an object from a dictionary representaiton
get_uuid()
idx(store)	Return the index which is used for the object in the given store.
named(name)	Name an unnamed object.
objects()	Returns a dictionary of all storable objects
reverse_uuid()
ruuid(uid)
set_cache_store(value_store)	Attach store variables to the collective variables.
set_observer(active)	(De-)Activate observing creation of storable objects
str_chain()	Return a string representation of the chain of dicts called.
sync()	Sync this CV with the attached storages
to_dict()	Convert object into a dictionary representation
with_diskcache([template, chunksize, …])

Attributes

ACTIVE_LONG
CREATION_COUNT
INSTANCE_UUID
base_cls	Return the base class
base_cls_name	Return the name of the base class
cls	Return the class name as a string
default_name	Return the default name.
is_named	True if this object has a custom name.
name	Return the current name of the object.
observe_objects
passing_chain	Return a list of chaindicts in order they will be tried.