Multiple State TIS on a Toy Model
This example covers the use the multiple state TIS on a simple toy model. We recommend new users start by working through these notebooks because (1) these notebooks have the most detailed discussion, and (2) the systems are simple enough that the simulations can be run interactively.
This example consists of three notebooks: one to obtain initial trajectories, one to perform the TIS simulation, and one to do the analysis after.
For more advanced techniques based on the same system, see the subsequent notebooks in the directory containing these examples.
- Obtaining the first trajectories for a Toy Model
- Running an MSTIS simulation
- Analyzing the MSTIS simulation
- Reaction rates
- Path ensemble properties
- Sampling properties
- Histogramming data (TODO)